CDS

Accession Number TCMCG081C34236
gbkey CDS
Protein Id XP_002284046.1
Location complement(join(4816010..4816111,4816599..4816626,4816807..4816853,4816938..4817039,4817132..4817203,4820259..4820369,4824795..4824900,4825460..4825501,4825623..4825689,4826094..4826214,4828212..4828268,4852210..4852260,4853815..4853993,4854453..4854546,4855120..4855137))
Gene LOC100250619
GeneID 100250619
Organism Vitis vinifera

Protein

Length 398aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA33471
db_source XM_002284010.4
Definition PREDICTED: queuine tRNA-ribosyltransferase catalytic subunit 1 [Vitis vinifera]

EGGNOG-MAPPER Annotation

COG_category A
Description Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming queuine, allowing a nucleophilic attack on the C1' of the ribose to form the product
KEGG_TC -
KEGG_Module -
KEGG_Reaction R03789        [VIEW IN KEGG]
R10209        [VIEW IN KEGG]
KEGG_rclass RC00063        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
KEGG_ko ko:K00773        [VIEW IN KEGG]
EC 2.4.2.29        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0005740        [VIEW IN EMBL-EBI]
GO:0005741        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006400        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008479        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016757        [VIEW IN EMBL-EBI]
GO:0016763        [VIEW IN EMBL-EBI]
GO:0019867        [VIEW IN EMBL-EBI]
GO:0031090        [VIEW IN EMBL-EBI]
GO:0031966        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031968        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0042803        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044429        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046982        [VIEW IN EMBL-EBI]
GO:0046983        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0098588        [VIEW IN EMBL-EBI]
GO:0098805        [VIEW IN EMBL-EBI]
GO:0101030        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:0140101        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGCTTCGGTTTGAGGTTCTTGGGAGGTTCAACCGTGCTCGAGCTGCCCAACTGACACTCCCTCACTTTGTGTGCCAGACACCTCTCTTTATGCCTGTAGGCACACAAGGGACAATAAAAGGTTTAACAACCAACCAGCTTGAGGAAATTGGTTGCCAAATAATACTTGGCAATACATATCATTTGGCACTTCGCCCTAGTTCTGAGCTGATCGATGAATTGGGGGGTCTCCACAAATTTATGAACTGGCCAAGAGCACTGCTTACAGACTCCGGCGGCTTTCAAATGGTGTCATTGTTGCATTTAGCTGACATTACTGAAAAGGGTGTAACATTTCAGTCACCAGTTGATGGAAAGCCAATGCTCTTAACACCTGAGGAATCGATTCAAATCCAAAATAGAATTGGTGCAGATATCATTATGGCTCTTGATGATGTAGTGAGAACCACCATTACTGGCCCACGAGTTGAGGAGGCTATGTATCGCACTCTTCGTTGGATAGACAGATGTATAGCAGCCCACAAGAGACCAGAAGAGCAGAATTTATTTGGTATTGTACAAGGTGGTTTAGATCCTGTGCTAAGGGATATTTGCGTAAGGGGCCTGGTAGATCGGAAATTACCTGGCTATGCTATTGGTGGTCTTTCAGGTGGTGAAGATAAAAATTCATTTTGGCGTGTTGTTGCTCAGTGTACTGCTGCCTTGCCAGACGATAAGCCTCGATATGTAATGGGTGTTGGTTATCCATTGGATATTGTAGTTTGCAGCGCTTTAGGCGCTGACATGTATGACTGTGTTTATCCTACTCGTACGGCTCGGTTTGGCACAGCTCTTGTACCCGAGGGAGTACTGAAACTCAAACACAAGGCAATGGCTGATGATACTCGTCCTATTGATCCTGCATGCATGTGTATGGTCTGCAAGAACTATACAAGGGCCTATATCCATTGCCTTGTTACAAAAGACGCAATGGGATCTCAGCTTCTGTCATATCACAATCTGTATTACATGATGAAGCTTAGCAGAGATCTCCACTCATCAATAATACAAGAGAGATTTCCAGAGTTTGTATGCGAGTTTCTGCAGAAAATGTTCCCCAAGGGTGACGTCCCTGAATGGGTTTGCAATGCCATGGAAGTTGCTGGAATTGATATCTCTTGCTGCTGTGCTCCATTCTCCTCATCCCAAGATTAG
Protein:  
MALRFEVLGRFNRARAAQLTLPHFVCQTPLFMPVGTQGTIKGLTTNQLEEIGCQIILGNTYHLALRPSSELIDELGGLHKFMNWPRALLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVRTTITGPRVEEAMYRTLRWIDRCIAAHKRPEEQNLFGIVQGGLDPVLRDICVRGLVDRKLPGYAIGGLSGGEDKNSFWRVVAQCTAALPDDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHKAMADDTRPIDPACMCMVCKNYTRAYIHCLVTKDAMGSQLLSYHNLYYMMKLSRDLHSSIIQERFPEFVCEFLQKMFPKGDVPEWVCNAMEVAGIDISCCCAPFSSSQD